java.lang.Object
- picard.illumina.parser.ParameterizedFileUtil
- - picard.illumina.parser.MultiTileFileUtil<OUTPUT_RECORD>

```
public abstract class MultiTileFileUtil<OUTPUT_RECORD extends picard.illumina.parser.IlluminaData>
extends ParameterizedFileUtil
```
For file types for which there is one file per lane, with fixed record size, and all the tiles in it, so the s_.bci file can be used to figure out where each tile starts and ends.

Field Summary

Fields
Modifier and Type Field Description

protected File bci

protected File dataFile

protected TileIndex tileIndex
- Fields inherited from class picard.illumina.parser.ParameterizedFileUtil
  base, DefaultSkipEmptyFiles, extension, faker, lane, matchPattern, PER_TILE_PATTERN_STRING, skipEmptyFiles, tiles

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`List<String>`	`fakeFiles(List<Integer> expectedTiles, int[] expectedCycles, IlluminaFileUtil.SupportedIlluminaFormat format)`	Given the expected tiles/expected cycles for this file type create a set of fake files such that the verification criteria are met.
`boolean`	`filesAvailable()`	Determine whether or not files are available
`List<Integer>`	`getTiles()`	Return a list of all tiles available for this file format and run
`List<String>`	`verify(List<Integer> expectedTiles, int[] expectedCycles)`	expectedCycles are not checked in this implementation.

Methods inherited from class picard.illumina.parser.ParameterizedFileUtil
checkTileCount, escapePeriods, fileToTile, getRunFile, getTiledFiles, makeBarcodeRegex, makeLaneTileRegex, setTiles, setTilesForPerRunFile

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Field Detail
  - bci
```
protected final File bci
```
  - tileIndex
```
protected TileIndex tileIndex
```
  - dataFile
```
protected File dataFile
```
- Method Detail
  - filesAvailable
```
public boolean filesAvailable()
```
    Description copied from class: ParameterizedFileUtil
    
    Determine whether or not files are available
    
    Specified by:
    
    filesAvailable in class ParameterizedFileUtil
    
    Returns:
    
    return true if files are found matching this types pattern, false otherwise
  - getTiles
```
public List<Integer> getTiles()
```
    Description copied from class: ParameterizedFileUtil
    
    Return a list of all tiles available for this file format and run
    
    Overrides:
    
    getTiles in class ParameterizedFileUtil
    
    Returns:
    
    A List of tile integers
  - verify
```
public List<String> verify(List<Integer> expectedTiles,
                           int[] expectedCycles)
```
    expectedCycles are not checked in this implementation.
    
    Specified by:
    
    verify in class ParameterizedFileUtil
    
    Parameters:
    
    expectedTiles - An ordered list of tile numbers
    
    expectedCycles - An ordered list of cycle numbers that may contain gaps
    
    Returns:
    
    A list of error messages for this format
  - fakeFiles
```
public List<String> fakeFiles(List<Integer> expectedTiles,
                              int[] expectedCycles,
                              IlluminaFileUtil.SupportedIlluminaFormat format)
```
    Description copied from class: ParameterizedFileUtil
    
    Given the expected tiles/expected cycles for this file type create a set of fake files such that the verification criteria are met.
    
    Specified by:
    
    fakeFiles in class ParameterizedFileUtil
    
    Parameters:
    
    expectedTiles - An ordered list of tile numbers
    
    expectedCycles - An ordered list of cycle numbers that may contain gaps
    
    format - The format of the files that are to be faked
    
    Returns:
    
    A list of error messages for this format

Modifier and Type	Field	Description
`protected File`	`bci`
`protected File`	`dataFile`
`protected TileIndex`	`tileIndex`

Class MultiTileFileUtil<OUTPUT_RECORD extends picard.illumina.parser.IlluminaData>

Field Summary

Fields inherited from class picard.illumina.parser.ParameterizedFileUtil

Method Summary

Methods inherited from class picard.illumina.parser.ParameterizedFileUtil

Methods inherited from class java.lang.Object

Field Detail

bci

tileIndex

dataFile

Method Detail

filesAvailable

getTiles

verify

fakeFiles