Package picard.illumina.parser
Class Tile
- java.lang.Object
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- picard.illumina.parser.Tile
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public class Tile extends Object
Represents a tile from TileMetricsOut.bin. Stores information on location (lane & tile #, density, number of clusters and the phasing/prephasing values associated with this tile
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Constructor Summary
Constructors Constructor Description Tile(int lane, int tile, float density, float clusters, TilePhasingValue... tilePhasingValues)
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description floatgetClusterCount()Returns the number of on this tile.floatgetClusterDensity()Returns the cluster density of this tile, in units of [cluster/mm^2].intgetLaneNumber()Returns the number of this tile's parent lane.Map<TileTemplateRead,Float>getPhasingMap()Map<TileTemplateRead,Float>getPrePhasingMap()intgetTileNumber()Returns the number/name of this tile.
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Constructor Detail
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Tile
public Tile(int lane, int tile, float density, float clusters, TilePhasingValue... tilePhasingValues)- Parameters:
tilePhasingValues- Either one or two TilePhasingValues, corresponding to the FIRST and potentially SECOND template reads
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Method Detail
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getLaneNumber
public int getLaneNumber()
Returns the number of this tile's parent lane.
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getTileNumber
public int getTileNumber()
Returns the number/name of this tile.
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getClusterDensity
public float getClusterDensity()
Returns the cluster density of this tile, in units of [cluster/mm^2].
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getClusterCount
public float getClusterCount()
Returns the number of on this tile.
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getPhasingMap
public Map<TileTemplateRead,Float> getPhasingMap()
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getPrePhasingMap
public Map<TileTemplateRead,Float> getPrePhasingMap()
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