RepresentativeReadIndexerCodec (picard 2.24.1 API)

java.lang.Object
- picard.sam.markduplicates.util.RepresentativeReadIndexerCodec

All Implemented Interfaces:

htsjdk.samtools.util.SortingCollection.Codec<RepresentativeReadIndexer>, Cloneable
```
public class RepresentativeReadIndexerCodec
extends Object
implements htsjdk.samtools.util.SortingCollection.Codec<RepresentativeReadIndexer>
```
Codec for read names and integers that outputs the primitive fields and reads them back.

Field Summary

Fields
Modifier and Type Field Description

protected DataInputStream in

protected DataOutputStream out

Constructor Summary

Constructors
Constructor Description

RepresentativeReadIndexerCodec()

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`htsjdk.samtools.util.SortingCollection.Codec<RepresentativeReadIndexer>`	`clone()`
`RepresentativeReadIndexer`	`decode()`
`void`	`encode(RepresentativeReadIndexer rni)`
`DataInputStream`	`getInputStream()`
`DataOutputStream`	`getOutputStream()`
`void`	`setInputStream(InputStream is)`
`void`	`setOutputStream(OutputStream os)`

Methods inherited from class java.lang.Object
equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Field Detail
  - in
```
protected DataInputStream in
```
  - out
```
protected DataOutputStream out
```
- Constructor Detail
  - RepresentativeReadIndexerCodec
```
public RepresentativeReadIndexerCodec()
```
- Method Detail
  - clone
```
public htsjdk.samtools.util.SortingCollection.Codec<RepresentativeReadIndexer> clone()
```
    Specified by:
    
    clone in interface htsjdk.samtools.util.SortingCollection.Codec<RepresentativeReadIndexer>
    
    Overrides:
    
    clone in class Object
  - setOutputStream
```
public void setOutputStream(OutputStream os)
```
    Specified by:
    
    setOutputStream in interface htsjdk.samtools.util.SortingCollection.Codec<RepresentativeReadIndexer>
  - setInputStream
```
public void setInputStream(InputStream is)
```
    Specified by:
    
    setInputStream in interface htsjdk.samtools.util.SortingCollection.Codec<RepresentativeReadIndexer>
  - getInputStream
```
public DataInputStream getInputStream()
```
  - getOutputStream
```
public DataOutputStream getOutputStream()
```
  - encode
```
public void encode(RepresentativeReadIndexer rni)
```
    Specified by:
    
    encode in interface htsjdk.samtools.util.SortingCollection.Codec<RepresentativeReadIndexer>
  - decode
```
public RepresentativeReadIndexer decode()
```
    Specified by:
    
    decode in interface htsjdk.samtools.util.SortingCollection.Codec<RepresentativeReadIndexer>