PhysicalLocation (picard 2.24.1 API)

All Superinterfaces:

Serializable

All Known Implementing Classes:

PhysicalLocationForMateCigar, PhysicalLocationInt, PhysicalLocationShort, ReadEnds, ReadEndsForMarkDuplicates, ReadEndsForMarkDuplicatesWithBarcodes, ReadEndsForMateCigar
```
public interface PhysicalLocation
extends Serializable
```
Small interface that provides access to the physical location information about a cluster. All values should be defaulted to -1 if unavailable. ReadGroup and Tile should only allow non-zero positive integers, x and y coordinates may be negative.

Field Summary

Fields
Modifier and Type Field Description

static int NO_VALUE

Method Summary

All Methods Instance Methods Abstract Methods Default Methods
Modifier and Type	Method	Description
`short`	`getLibraryId()`
`short`	`getReadGroup()`
`short`	`getTile()`
`int`	`getX()`
`int`	`getY()`
`default boolean`	`hasLocation()`	Default implementation of a method to check whether real location data has been set.
`void`	`setLibraryId(short libraryId)`
`void`	`setReadGroup(short rg)`
`void`	`setTile(short tile)`
`void`	`setX(int x)`
`void`	`setY(int y)`

Field Detail
- NO_VALUE
```
static final int NO_VALUE
```
  See Also:
  
  Constant Field Values

Method Detail

getReadGroup
```
short getReadGroup()
```

setReadGroup
```
void setReadGroup(short rg)
```

getTile
```
short getTile()
```

setTile
```
void setTile(short tile)
```

getX
```
int getX()
```

setX
```
void setX(int x)
```

getY
```
int getY()
```

setY
```
void setY(int y)
```

getLibraryId
```
short getLibraryId()
```

setLibraryId
```
void setLibraryId(short libraryId)
```

hasLocation
```
default boolean hasLocation()
```
Default implementation of a method to check whether real location data has been set.