SequenceDictionaryUtils.SamSequenceRecordsIterator (picard 2.24.1 API)

java.lang.Object
- picard.util.SequenceDictionaryUtils.SamSequenceRecordsIterator

All Implemented Interfaces:: Iterator<htsjdk.samtools.SAMSequenceRecord>

Enclosing class:: SequenceDictionaryUtils

public static class SequenceDictionaryUtils.SamSequenceRecordsIterator
extends Object
implements Iterator<htsjdk.samtools.SAMSequenceRecord>

Constructor Summary

Constructors
Constructor Description

SamSequenceRecordsIterator(File referenceSequence, boolean truncateNamesAtWhitespace)

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`boolean`	`hasNext()`
`htsjdk.samtools.SAMSequenceRecord`	`next()`
`void`	`setGenomeAssembly(String genomeAssembly)`
`void`	`setSpecies(String species)`
`void`	`setUri(String uri)`

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface java.util.Iterator
forEachRemaining, remove

Constructor Detail

SamSequenceRecordsIterator

public SamSequenceRecordsIterator(File referenceSequence,
                                  boolean truncateNamesAtWhitespace)

Method Detail

setGenomeAssembly

public void setGenomeAssembly(String genomeAssembly)

setUri
```
public void setUri(String uri)
```

setSpecies

public void setSpecies(String species)

hasNext
```
public boolean hasNext()
```
Specified by:

hasNext in interface Iterator<htsjdk.samtools.SAMSequenceRecord>

next
```
public htsjdk.samtools.SAMSequenceRecord next()
```
Specified by:

next in interface Iterator<htsjdk.samtools.SAMSequenceRecord>