QdFilter (picard 2.24.1 API)

java.lang.Object
- picard.vcf.filter.QdFilter

All Implemented Interfaces:

VariantFilter
```
public class QdFilter
extends Object
implements VariantFilter
```
Filters out sites that have a QD annotation applied to them and where the QD value is lower than a lower limit.

Field Summary

Fields
Modifier and Type Field Description

static String FILTER_NAME

Constructor Summary

Constructors
Constructor Description

QdFilter(double minimumQd)

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`String`	`filter(htsjdk.variant.variantcontext.VariantContext ctx)`	Check to see if the VariantContext should have a filter applied to it.
`List<htsjdk.variant.vcf.VCFFilterHeaderLine>`	`headerLines()`	Return VCF header lines that define filters that may be applied by the VariantFilter.

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Field Detail
  - FILTER_NAME
```
public static final String FILTER_NAME
```
    See Also:
    
    Constant Field Values
- Constructor Detail
  - QdFilter
```
public QdFilter(double minimumQd)
```
- Method Detail
  - filter
```
public String filter(htsjdk.variant.variantcontext.VariantContext ctx)
```
    Description copied from interface: VariantFilter
    
    Check to see if the VariantContext should have a filter applied to it. If so return the filter string, otherwise return null.
    
    Specified by:
    
    filter in interface VariantFilter
  - headerLines
```
public List<htsjdk.variant.vcf.VCFFilterHeaderLine> headerLines()
```
    Description copied from interface: VariantFilter
    
    Return VCF header lines that define filters that may be applied by the VariantFilter.
    
    Specified by:
    
    headerLines in interface VariantFilter